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An Automated Tool for Assessing Virus Data Quality
… and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary … This work was also supported the grant #2016/23218-0 from São Paulo Research Foundation (FAPESP). A.P.C. received …
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JGI@25: Strengthening Soybean
… soybean became the first legume species with a published complete draft genome sequence. At the time, the vital … podcast minisode.)  In 2016, the JGI accepted a proposal from Sebastien Duplessis of the French National Institute … Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are available on MycoCosm …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get …
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Cell Extracts from Bacteria and Yeast Retain Metabolic Activity after Extended Storage and Repeated Thawing
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Complete Genome Sequence of Phormidium yuhuli AB48, Isolated from an Industrial Photobioreactor Environment
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for which quality DNA has been … sequence fragments can lead to high-quality yet incomplete genome sequences which could bias the analyses. …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… changes in cyclic di-GMP via live cell imaging. Summary From digestive tracts to plant surfaces and soil, bacteria …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… the visit of an esteemed interdisciplinary delegation from the University of Duisburg-Essen (UDE), Germany with … a diverse range of topics related to structural biology, single cell and systems biology, omics, and big data … is the method development to study active sites or single cells in their functional aqueous environment.  During the …
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JGI@25: Studying Sorghum’s Survival Skills
… this time aligning it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis … ( 2017 ), have identified many more genes than found in the single reference genome, including traits useful for … have also been sequenced, and the EPICON studies are still informing work on sorghum’s drought tolerance.     …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… methodologies developed for natural languages to study genomes,” Wang explained.  And since microbial genomes are … machines. It has been applied in a variety of industries, from the health care to the financial sector — whether to … of DNA; genes analogous to paragraphs;  genomes equate to complete written works. Using large amounts of genomic data …
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