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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab … Asaf Salamov, Igor Grigoriev Project:  Training new JGI genomes with Tiberius Brandon Imstepf Mentor: Brian Bushnell …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, … Our group also performs ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Our group …
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A Collaboration to Improve Plant Genome Annotations Across Species
… Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural … DAN UDWARY: Nothing to be sorry about. Yeah, no, your project was really cool. The vanadium haloperoxidases are … organisms we’re finding– at least by looking at their full genomes — are really not like anything that’s been …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg … Program , sequences of several hundred green millet plant genomes were generated, though the final analyses focused on … JGI group has been wonderful to collaborate with, and this [project] wouldn’t have been possible without their …
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Natural Prodcast Episode 4: Nancy Keller
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! … so, so cheap to sequence. Right now, for our particular projects, we’re not doing that right now, but we might. I …   DAN: Got it.    NANCY: And this is really to complete the genomes, and I’m really thankful for this. It sort of goes …
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Natural Prodcast Episode 8: Eric Schmidt
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back for … so I’m hoping we can follow up with him again as the project progresses! If you’re interested in RiPPs, I’ll put … Eric was a postdoc, and Eric and I worked on the aflatoxin project together, which – we’ve already talked a little bit …
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Nikos Kyrpides
… of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in Molecular Biology and Biotechnology, …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …
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Making a Lichen Together
… clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could help inform efforts at …
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A Complex Confection Decoded: Sugarcane Reference Genome
… work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 has … of Experimental Botany (IEB) was supported by the ERDF project “Plants as a Tool for Sustainable Global …
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Natural Prodcast Episode 23: Aaron Puri
… another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … in terms of their natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that …
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