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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… are due March 17, 2021 for the FICUS proposal call. Q&A from the Webinar: Q(uestion): Can I apply as a postdoc, or … proposal? A:  If you have a good idea of what you want, go straight to  Sample Use Request Form . Otherwise, email us … sets. Q:  Does NEON have or plan on collecting RNA samples from soil or surfaces for microbe-focused collections? A: …
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Webinar: MycoCosm Tutorial
… to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and … in metagenomes? A: Search in metagenomes is available from another JGI portal, IMG:  https://img.jgi.doe.gov 7.  … support diploid genomes that are now common with long read technology? and how do you present the different alleles? A: …
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Intracellular pathways for lignin catabolism in white-rot fungi
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Chapter Seven Phylogenetics and Phylogenomics of Rust Fungi
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How Maize Makes An Antibiotic Cocktail
… assumed that maize synthesizes these compounds via clear, straight pathways, entailing the function of more than a … To uncover the enzymes, the team used a battery of techniques. They screened panels of hundreds of maize lines … ability make zealexins, and harnessed gene expression data from these lines to identify genes associated with zealexin …
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A Grass Model to Help Improve Giant Miscanthus
… genomic tools, allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy … whose biomass can be renewably converted into energy or biofuels. Although a member of the grass family, as its name … of California, Berkeley and the HudsonAlpha Center for Biotechnology. Most plants are diploids with two copies of each …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… among the major high-yield C4 crops, as are the candidate biofuel feedstocks Miscanthus and switchgrass.  Innumerable … in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, along with … are genes out there that affect this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department … honor and a life changing experience to me. Starting my PhD straight out of undergraduate, I have not had the experience … approach and as a plant biologist, I have learned so many techniques and theory. Being able to work with state of the …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the … strategies for converting plant waste into sugars for  biofuel production. Additionally, these fungi play a role in …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for … JGI user community to participate in the development and biotechnology applications of various biomaterials. These … DE-AC02-05CH11231. This research was developed with funding from the Defense Advanced Research Projects Agency (DARPA) …
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