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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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Natural Prodcast Episode 9: Roger Linington
… products field as it relates to structure elucidation and genome mining, and how we might start to better connect … to try and create an open source database of all known microbial natural products. So if you think about natural … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User …
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Jane Grimwood Named HudsonAlpha Genomics Chair
City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … soon after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford … A 2021 Nature paper announcing a high-quality reference sequence of the complex switchgrass genome , using samples …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the … and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … biology. Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and … Microbiology and Biotechnology Diversity Committee Member (2015-2016), Society for Industrial Microbiology and …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … developed and applied novel computational and experimental sequence-based methods for elucidating the gene regulatory … C, Xu J, Northen T, Visel A , Bristow J, Niyogi KK, Wei CL (2015).  Lineage-specific chromatin signatures reveal a …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi …
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Automated annotation of scientific texts for ML-based keyphrase extraction and validation
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Berkeley National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a …
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