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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of … of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity with gene … workflow in  GNPS2 .   … In support of user science, the JGI Metabolomics Platform delivers rich metabolite profiles …
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Axel Visel
… and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … served as JGI Interim Director from March 2016 – March 2017.   … Axel Visel is the JGI's Deputy for Science Programs. … I, Pennacchio LA, Rubenstein JL (2013, * corresponding author). A high-resolution enhancer atlas of the developing …
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Natural Prodcast Episode 1: The Primer, Part 1
… for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at … and that’s what we’re going to be talking about here. JGI, as an institution has recognized how important natural …
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Expanding Virophage Diversity
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … gut and taxonomically classified into 27 distinct clades (17 of them without previously known representatives). Of … diversity, distribution, and evolution of virophages.” Lead author David Paez-Espino  discussed an early version of the …
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Plant-Microbial Interactions Group
… rhizobacterium (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage genes is the … 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: Katsuma Yonehara (Tokyo University) …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the … to all sequence and annotation data and their comments. … JGI researcher Dan Udwary hosts this “fireside chat”-style … the science and scientists of secondary metabolism. As the JGI acts on its goals in — and builds out its capabilities …
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Natural Prodcast Episode 22: Alison Narayan
… niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical … of flavin independent monooxygenases with the help of JGI’s DNA synthesis grant. And that having a whole panel of … short half life. JACKIE WINTER: So with your [project] with JGI, how many flavin monooxygenases are you sequencing, sort …
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Fungal & Algal Program
… an international research team in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a … algal genomes and genome annotations generated by the JGI and by others. The web portal allows users to navigate …
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Taking Stock of the Known and Unknown Microbial Space
… to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of their diversity we've actually captured,” said co-first author Dongying Wu, a member of the Functional Annotation …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of … for their ability to produce desired chemicals. … The JGI's DNA Synthesis Science Group supports researchers … data science tools, and a user science group. … The JGI has developed a suite of build-optimization software …
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Natural Prodcast Episode 7: Ben Shen
… think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … to the Primer episodes, then you heard me talk about JGI’s Earth Secondary Metabolome initiative, and our … different people have different numbers, but in general, an authoritative number for total number of natural products of …
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