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CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the … Horn D, Kayserili H, Opitz JM, Laxova R, Santos-Simarro F, Gilbert-Dussardier B, Wittler L, Borschiwer M, Haas SA, … I, Pennacchio LA, Rubenstein JL (2013, * corresponding author). A high-resolution enhancer atlas of the developing …
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Finding the Fermenters
… more than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible … National Institute of Food and Agriculture grant 1019985, and the University of California, Davis Small Grant …
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A Collaboration to Improve Plant Genome Annotations Across Species
Manager Sarah Sharman recently interviewed study first author Avinash Sreedasyam, a HudsonAlpha senior scientist, … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental …
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Tracking the Origins of Methane-Producing Microbes
… observed, but to the “TACK” superphylum,” said study first author Bojk Berghuis. “This provided us with genetic …
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Tanja Woyke Elected to American Academy of Microbiology
… in the field of microbiology and are relied upon for authoritative advice and insight on critical issues in … proteins, and virus diversity in this group expanded 10-fold, offering the opportunity to refine the phylogenetic …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Enlarging Windows into Understanding Gene Functions
… 2021 in Nature Methods , JGI researchers led by co-first authors Leo Baumgart and Juna Lee developed two approaches … transcription factor of interest. Nature Methods paper coauthor Lee did the initial development of a streamlined … their functional interpretation is as tough as it has been 10 years ago,” he said. “We thought about reconstructing …
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Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics.
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Effects of Polar Light Cycle on Microbial Food Web
… cycles. Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A … work was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program …
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Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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