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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are … (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, … 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 …
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Prepublication data sharing
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Clustering Categorical Data
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Metabolomics
… profiles from diverse biological and environmental samples using advanced liquid chromatography mass spectrometry … soil, lake).  A wide range of metabolites are identified using LC-MS/MS methods optimized for specific types of … and our methodology for metabolite analyses.  … Read more about our submission guidelines, what you can expect from …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum
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Exabiome: Advancing Microbial Science through Exascale Computing
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand how ecosystems work and … time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding …
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EcoFABs: advancing microbiome science through standardized fabricated ecosystems
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental approaches to … with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of … 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature …
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