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Natural Prodcast Episode 1: The Primer, Part 1
… stories about natural products, so you can get a feel for why I think they’re so important, and we’ll start to explain … more about some of the background and sort of the reasons why we want to do this. And also to provide a little more … of the fun things that I hope that I can express today is why secondary metabolism is interesting and why it is that …
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Natural Prodcast Episode 22: Alison Narayan
… enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … DAN UDWARY: That’s weird. I hadn’t heard that before. Why is that? Why would that be the case? ALISON NARAYAN: …
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A Step Toward Controlling Soybean Rust
The fungus  Phakopsora pachyrhizi causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As … JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       … The U.S. Department of Energy …
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FICUS-NERSC/KBASE
… … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a regular basis, in accordance with …
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Programs & Platform Leads
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Natural Prodcast Episode 17: Cassandra Quave
… culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? … is going to have a very different chemical makeup than the leaf tissue because those tissues each serve a different …
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Natural Prodcast Episode 20: Brian Bachmann
And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … polyketide synthase and then P3. We still don’t know why 20 years later. JACKIE WINTER: It’s pretty amazing, … that’s dripping water, percolating through the soil through leaf litter and humic acids and those kind of things close …
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Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide‐binding site leucine‐rich repeat (NBS‐LRR)‐rich genomic regions of chromosome 19 in poplar
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Natural Prodcast Episode 5: Brad Moore
… then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … working with you, Dan, on this one, and we said, “Well, why don’t we have you know, the bioinformaticians go against … get made fun of by my now-wife, because she was wondering why it is that we needed to produce more toxins in the lab …
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CSP New Investigator Call
… the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …
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Mission
… in doing so enabled the JGI to be the first to publish the sequence analysis of the target chromosomes 5, 16, and 19, … basis of their behavior in the environment.  The JGI genome sequences and metabolomes of microbes and microbial …
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Institutional User Agreements
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