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Microbial Program
… resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes …
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Complete Genome Sequence of Rahnella aquatilis CIP 78.65
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Natural Prodcast Episode 7: Ben Shen
… world – as many from outside the US as inside – and so, especially if English is not your first language, if there’s … the paradigm of how to discover natural products. So, why I’m very excited to be working with Dan, you, with the … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very …
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Special Initiatives & Programs
… capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA … and should generally conform to the guidelines for our  CSP Large Scale call .  Process Proposals may be submitted at … and personnel resources for genomic research and sequence-based science.  Projects include de novo generation …
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Data Policy
FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science … embargo starting at construct or strain delivery.  Detailed sequence information for constructs are made publicly … include multiple projects of different types which can span several years. Projects are defined at proposal …
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Natural Prodcast Episode 1: The Primer, Part 1
… to energy and the environment – problems that might need special technology for DNA sequencing, genomics, … stories about natural products, so you can get a feel for why I think they’re so important, and we’ll start to explain … more about some of the background and sort of the reasons why we want to do this. And also to provide a little more …
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Publication Policy
… the right to produce manuscripts for publication and the responsibility for leading the efforts to do so, and JGI … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other … annotation, comparative analysis, and interpretation of sequence, metabolomics, and functional genomics data types …
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Natural Prodcast Episode 18: A CSP Primer
… you may have hear over there, with a few more questions specific to secondary metabolites. I hope both versions are … at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … that describe the work. In general. Scientific merit and why it’s important. The DOE mission is one of these …
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Synthetic Biology Lab
We focus our efforts on integrating database mining and sequence design with scaling the production of large, … developing methods for converting digital information from sequence databases into biotechnological or environmental …
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New Lineages of Life Group
… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, …
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Offerings & Capabilities
… through end-to-end automation, and further advancing sequence applications, single cell genomics, DNA synthesis, …
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Synthetic Biology Informatics Group
… software includes: gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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