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Natural Prodcast Episode 18: A CSP Primer
… at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. … that describe the work. In general. Scientific merit and why it’s important. The DOE mission is one of these …
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Sequencing Technologies
Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …
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Natural Prodcast Episode 21: Elizabeth Parkinson
The genes are pretty much 100% identical. We don't know why one is expressed over the other. As far as whether we're … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain … on DAP-Seq: Enlarging Windows into Understanding Gene Functions Purdue's page on mental health resources. It might …
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Natural Prodcast Episode 22: Alison Narayan
… enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we think about enzyme function is we think about the natural function versus can … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … strains. This approach allows for the identification of key functional traits that have direct applications in bioenergy … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …
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IMG Group
… and analysis of (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for … sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage genes is the modulation of their …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … by bacterial or fungal metabolism by microbes, will have a functional role. We started from that. Evolution doesn’t … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …
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Micro-Scale Applications Group
Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … the quality of single-cell genomes and directly link functional information with individual cells. Research Team  … access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated …
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Single Cell Research Group
… is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic … In particular during an era of ‘homology creep’, function prediction as purely based on annotation may not be …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the …
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