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Differences in crop bacterial community structure between hoatzins from different geographical locations
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Natural Prodcast Episode 6: Marc Chevrette
… at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … functional was these secondary metabolite pathways. So why was that? What is it about secondary metabolite pathways … getting really excited about January, we’re having our new crop of partner instructors come into Wisconsin so we can …
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Examples: Successful LOIs & Submissions
… from the PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at … plant environment interactions to enable advanced bioenergy crops … Characterization of simplified soil communities with …
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Natural Prodcast Episode 12: Nadine Ziemert
… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … DAN UDWARY: I’m sitting on my bed in Paris, pointing a microphone at my face because I didn’t want to be in the other … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …
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Metabolomics Program
… of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial … environmental sustainability, and improving bioenergy crops. … The Metabolomics Program is focused on … … EcoFABs:  For studying microbe-host (or plant-microbiome) interactions under controlled conditions, …
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Products
… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs … in length, cloned into vector of choice Glycerol stock of sequence verified clone 170/NA DNA Synthesis Constructs …
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Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows
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How to Submit Sequencing Samples
… pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …
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Microbial Program
… resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … around the world. … Integrated Microbial Genomes and Microbiomes … Integrated Microbial Genomes — Plasmid …
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Natural Prodcast Episode 8: Eric Schmidt
… rich and underappreciated. And we’ve worked both with the microbiome. So, with symbiotic bacteria that live in animals … you maybe explain what’s going on with their biology and why they’re so important to natural products? ERIC:  Sure. … turns a peptide, for example, from a disordered sequence into an antibiotic that kills bacteria through a …
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Data Ecosystem
… will be the development of tools and infrastructure for microbiome data science, and the development of new … subject area. … The NMDC is tackling existing gaps in microbiome science through distributed data infrastructure … data technologies. The NMDC seeks to connect and engage the microbiome community to unlock new possibilities in …
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Natural Prodcast Episode 7: Ben Shen
… and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a perfect storm in … the paradigm of how to discover natural products. So, why I’m very excited to be working with Dan, you, with the … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very …
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