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Natural Prodcast Episode 8: Eric Schmidt
… you maybe explain what’s going on with their biology and why they’re so important to natural products? ERIC:  Sure. … do you think it was about that? What factors led to the community – not necessarily competing, but – sort of, diving … turns a peptide, for example, from a disordered sequence into an antibiotic that kills bacteria through a …
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Who We Are
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Natural Prodcast Episode 16: Marcy Balunas
… about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  MARCY: … does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to …
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Synthetic Biology Lab
DNA synthesis and assembly technologies to the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the production of large, … developing methods for converting digital information from sequence databases into biotechnological or environmental …
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Data Policy
… all user projects accepted FY22 and later through the Community Science Program (CSP), Facilities Integrating … embargo starting at construct or strain delivery.  Detailed sequence information for constructs are made publicly …
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Partnerships Development Team
… three primary routes:  … The CSP provides the scientific community at large with access to high-throughput sequencing … visit the Intellectual Property Office  here . … The Community Science Program … Strategic Partnership Projects … …
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Metagenome Program
Program is to develop a deeper understanding of microbial community assembly and microbial interactions, including … for user analysis. Additionally, the Program works to link community-scale microbial activity measurements, such as … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …
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Natural Prodcast Episode 9: Roger Linington
… is going to be just invaluable to the natural products community. It’s a big international community effort, and I … Apple Podcasts or wherever you’re getting this and tell me why you’re listening. DAN: But, now, here’s Natural Prodcast … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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Microbial Program
… resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from … from environmental samples.  … The IMG/M system serves as a community resource for comparative analysis and annotation … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes …
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Natural Prodcast Episode 22: Alison Narayan
… enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … that. Even having that kind of data and sharing it with the community though can help inform how synthetic chemists …
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JGI Portals
… platforms are a key resource for the broader scientific community and require constant developments to meet the … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … could call things such that the terms will be useful. The community– we should say that. I mean, we just proposed … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …
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