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Natural Prodcast Episode 7: Ben Shen
… schedule for a while. Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great … well. One is to do DNA sequencing. So upon sequencing many genomes, now we don’t have to, as in the past, go randomly … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural …
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Micro-Scale Applications Group
Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet … technology in order to enhance the quality of single-cell genomes and directly link functional information with …
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Partnerships Development Team
Lab Intellectual Property Office to facilitate these new interactions.  The PDT enables industry engagement … to license Lab inventions generated through the CRADA.  … New Leaf Symbiotics is partnering with the JGI and Berkeley … with the JGI to help drive discoveries that will render new economic advantages for farmers concerned with improving …
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Secondary Metabolites Program
… and their roles in the environment, can unlock new avenues for bio-based products and bioenergy crop … the program strives to facilitate the discovery of new bio-based molecules that can drive innovations in … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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Natural Prodcast Episode 19: Bill Fenical
… this an awfully long time ago, and she’s been in her new job for a long time now, but I guess you all might not … powerful people. These were people that really controlled microbial drug discovery. And a guy like me, with no … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …
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Metabolomics Program
… exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … systems can provide novel insights into the impact of microbial symbionts and their hosts on ecosystems.   …
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Natural Prodcast Episode 4: Nancy Keller
… example of probing fungi for natural products and finding new things. And so, really happy to have you here. And … of the food was bad from mold, but that’s all I really knew. I didn’t really think about it a lot. And so after I …   DAN: Got it.    NANCY: And this is really to complete the genomes, and I’m really thankful for this. It sort of goes …
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JGI Portals
… demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … users. It is also a place where the community can upload new data for use by scientists and the public, and provide …
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Examples: Successful LOIs & Submissions
Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities … genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during … … CSP Large-Scale LOI #1 … CSP Large-Scale LOI #2 … CSP New Investigator Submission … CSP Functional Genomics …
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Natural Prodcast Episode 15: Katherine Duncan
Right. Kate Duncan: And Pseudonocardia . And we’ve got new species which we’re currently in the process of almost … there have been huge advances in both. The cool thing about genomes is you can, well, if your assembly is good, you can … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is …
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Natural Prodcast Episode 11: Marnix Medema
… that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the … and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …
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Natural Prodcast Episode 17: Cassandra Quave
… read all 400 pages of her life and I feel like I have a new friend that I’m really eager to talk to. So our guest … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of … that we found, indeed, that both formulations had some antimicrobial properties. But the one that was used in …
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