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Single Cell Research Group
… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., …
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Microbiome Data Science Team
Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. … Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et …
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JGI Portals
… demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all … tools for analyzing the functional capability of microbial communities based on their metagenome sequence, in the …
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Metabolomics Program
… exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … to analyze metabolites in environmental organisms, communities, and samples including state-of-the-art … systems can provide novel insights into the impact of microbial symbionts and their hosts on ecosystems.   …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … allow that to bind. Your receptor also typically has some tag so that you can then pull down the receptor with that …
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Natural Prodcast Episode 16: Marcy Balunas
… tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  … That is one of the really big frontiers for the next stage of natural product drug discovery I think. Or even … computational skills among biologists JGI CSP Proposal: Metagenomic mining of natural product diversity and …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… the latest molecular techniques to learn more about the microbial communities in the Arthur R. Marshall Loxahatchee National … system, reached  Emiley Eloe-Fadrosh , who heads the  Metagenome Program . “After discussing the project with him, I …
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Natural Prodcast Episode 11: Marnix Medema
IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial … episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is … just been looking at like 16S taxonomic profiles of these communities looking at who is in there, but never like what …
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Plant Program
… development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … focusing on how environmental stress and microbial communities affect plant growth and productivity. These … accessions) and protocols (transformation, crossing, mutagenesis) are available to the community.   … EcoFABs link …
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Primer and platform effects on 16S rRNA tag sequencing
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How to Target a Microbial Needle within a Community Haystack
… tested and deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently … strides in generating genome sequences for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of …
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