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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Yeah, biology is being this engineer that’s constantly refining its designs. But sometimes if you’re looking at it … so I really had to dig into all the different biosynthetic mechanisms and into phylogeny. And I had to look at so many …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet … and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … not in natural products, these were in studying regulatory mechanisms of, first, E. coli and then Rhodobacter … which, at least at the time, was called Inatreq . It’s a fungicide that is active against Sartoria which is a really …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the … natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. When your …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall … (CSP 982), and funds from the Fred E. Dickinson Chair of Wood Science and Technology to N.L.G.. V.W.W. was partially …
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Genome Insider
Genome Insider is a podcast that showcases the work of JGI collaborators in brief forays, connecting audiences … — and harness — the superpowers encoded in plants, fungi, microalgae, environmental viruses, and bacteria to …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an … with Christian, I started getting a little bit more into fungi and learning the differences of all the genetic …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … like to do a better job of understanding gas phase reaction mechanisms. We would like to do a better job of predicting … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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Metabolomics
… functional genome annotation, improves understanding of the role small molecules play in diverse biological … sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …
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On the origin of bird’s nest fungi: Phylogenomic analyses of fungi in the Nidulariaceae (Agaricales, Basidiomycota)
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing the frontiers of …
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