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Metabolomics Program
… biogeochemical processes, development of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, environmental sustainability, … and the bioeconomy including understanding enzymatic transformations, pathways, and how changes in metabolism can …
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A unified catalog of 204,938 reference genomes from the human gut microbiome
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A genomic catalog of Earth’s microbiomes
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Data Ecosystem
… biology. The collaborations present exciting possibilities for scientific exploration, granting access to diverse … way. We also work with our partners to ensure platforms are future-ready for advancements enabled by artificial intelligence and … to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development …
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Micro-Scale Applications Group
… of single-cell genomes and directly link functional information with individual cells. Research Team    … analytical standards to accurately measure environmental microbiome activity levels.This functional assay lets us move beyond cataloging the genes of microorganisms and start making …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… challenges. Oh, the magical world of the cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen … the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … head of the Hess Lab at UC Davis. “It was a really huge effort in tool development and … that was really the …
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Disclaimer
… NOTICE Information from this server resides on a computer system … the United States Government nor the University of California nor any of their employees, makes any warranty, … including the warranties of merchantability and fitness for a particular purpose, or assumes any legal liability or …
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Uncovering Novel Genomes from Earth’s Microbiomes
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … . Known as the GEM (Genomes from Earth’s Microbiomes) catalog, this work results from a collaboration involving … he’s interested in expanding the diversity of the reference database he’s developing called the  Microbial …
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How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting … sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of Sample QC …
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A functional microbiome catalogue crowdsourced from North American rivers
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … of the day I’m due to release it, which is not ideal for me keeping myself on my self-imposed schedule. So, we’ll … or methanol, and now we have access to the whole sigma catalog of precursors in their 12C form. You can feed those …
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Natural Prodcast Episode 4: Nancy Keller
… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … the feed, the secondary metabolism field has been dominated for … well, as long as I can remember, by bacterial … they deserve. They are so exciting. I get frustrated. Like microbiomes  – you know how that’s a big deal now. You go to …
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