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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C Abergel, T Woyke (2022) Giant virus biology and diversity in the era of …
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User Support
… collaborate with users to develop project requirements, define the scope of work and outline roles and responsibilities resulting in a formal … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of … Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, … (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … Eric for a long time – we worked together on Aflatoxin biosynthesis while he was a postdoc in Craig Townsend’s lab … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … is a biosynthetic chemist, who was more working from the biosynthesis standpoint. And then I was talking at the same … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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DNA Synthesis Program
Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and … CO2 fixation, redox reactions, and plant metabolite biosynthesis, synthesizing and biochemically analyzing …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … Natural Products conference, which took place last January 2020 in San Diego. San Diego, of course, is the “home turf” … had nothing to do with the ocean. It was all in the area of biosynthesis, enzymology, and working with terrestrial …
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Flexizyme-Enabled Benchtop Biosynthesis of Thiopeptides
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … right? BEN: Yeah, yeah. Well, we are at [10 to the] minus 12 [Molar concentration]- is sufficient to kill cells. So … only one of the two hands. So that’s a question about biosynthesis. So, I took this question in mind, and come to …
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