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… other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … PI and receive permission for their planned work.   … For sequencing or metabolomics projects: data are subject to a  … Proposals accepted before FY22 are transitioning away from producing use-restricted data. JGI proposals typically …

The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  …

This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in Jupiter Florida. This … started collaborating with Ben and his group to work on sequencing, synthesis and genome mining technology to help … well. One is to do DNA sequencing. So upon sequencing many genomes, now we don’t have to, as in the past, go randomly …

… environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, from an international …

We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the …

… conversation with Aaron Puri. He is an Assistant Professor from the Chemistry department at the University of Utah, so … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… to cutting-edge capabilities to help advance their science by generating data in three overarching categories: Sequencing, Synthesis and Metabolomics. Strong internal … automation, and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … …

… over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue University. She’s in the Department of Chemistry … technology.] BETSY PARKINSON: OK. DNA affinity purification sequencing. And so the way this essentially works is you … in is actually seeing whether we could go into the genomes and predict what the natural product might actually …

… our interview this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he … which was a very early genome mining company, back when DNA sequencing of natural product pathways was hard and … come, though, too when you start talking about going after single gene clusters. BRIAN BACHMANN: That’s right. JACKIE …

… manager may then schedule and allocate resources for DNA sequencing. … No. However, the JGI does maintain a list of … IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …

The ranked proposal list, along with a recommendation from management at JGI and the other participating … plan is written into a Statement of Work document. … For sequencing projects, once work is under way, raw sequence … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …