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… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … a scalable solution for production of high-quality fungal reference genomes, this program is an important initiative …

… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for the remainder … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … the pandemic in Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, … based on their metagenome sequence, in the context of reference isolate genomes included from the IMG/M system. …

… cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to … For counting: text file of gene counts (mapped against reference transcriptome or de novo assembly), DGE, alignment …

… artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities … the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The Research Team   … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …

… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … through advanced genomic techniques and computational analysis: Through cutting-edge genomic techniques and … A complete publication list available at Google Scholar. Dutkiewicz, Z. …

… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — … a combination of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity …

… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses … filter, cluster, annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotech. 37, 29–37. …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … products? ERIC:  Sure. So sponges are one of the most common animals in the ocean. They’re really species-diverse. … end, we took an approach that was kind of a simplified metagenome sequencing approach to pick this system apart.  DAN:  …

… this identification, metabolomics enables functional genome annotation, improves understanding of the role small … based methods in combination with advanced computational analysis.   Overview of metabolomics products At JGI, … as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified using LC-MS/MS …