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Natural Prodcast Episode 7: Ben Shen
… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … part of that. I’m also going to mention that Ben talks fast – it’s part of his energy – and he has an accent, and, … So, we were essentially using brute force to isolate the proteins. The proteins are the biological version of the …
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Natural Prodcast Episode 8: Eric Schmidt
… of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … like bacteria, where we figure we can make more progress faster, which is sometimes true. Other people, like Eric … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … bind similar ligands. And so one of-- DAN: OK. The similar proteins are going to bind similar molecules. Yeah, OK. … take bets on the side, and you just-- makes a day go by faster. BETSY PARKINSON: But it also makes it more fun …
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Data Policy
Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … by those generating data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Natural Prodcast Episode 3: The Primer, Part 3
… it’s a little hard to find in print, but we live in the information age and the ebook version is available at most … DNA sequence – sequences for the genes that code for the proteins that produce secondary metabolites. Do you … knows, for whatever reason. “Better” in terms of, you know, utility for some reason. And so the promise of understanding …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … more structural diversity — so that one uses acyl carrier proteins as co-substrate. So the other ones they use CoA … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … time, 10 years! ALISON TAKEMURA: Wow. It’s all happened so fast. I mean, in terms of human evolution and knowledge, … right. I mean, that too was an issue. What function, what utility, what kind of applications might molecules from the …
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Special Initiatives & Programs
… sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exception of …
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Extreme-Scale Many-against-Many Protein Similarity Search
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Natural Prodcast Episode 22: Alison Narayan
… the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … exploring the function of this enzyme or its synthetic utility. But an enzyme is a biocatalyst. I would say those … necessarily know if I buy into that. I’m curious about the algorithms that are used to do these predictions. And if …
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Natural Prodcast Episode 4: Nancy Keller
… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … of the DNA of genes and bacteria, occurred much faster earlier than they did with fungi. And it was actually … are encoding the same things. And so you have to have good algorithms. And one interesting thing is though, you might …
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Microbial Program
… inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … large-scale genomic data to advance microbial research that drives sustainable solutions in energy, … and single cells. This effort uncovers novel genes, protein families, and pathways, enhancing our understanding …
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