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Natural Prodcast Episode 17: Cassandra Quave
… Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … unexpected way. So I had to leave with that chance when it presented itself. ALISON TAKEMURA: So I have an idea of … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … trying to understand the enzymology. So we would actually express the genes and do the biochemistry to understand what …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and the state of the field today. So, not as much of a preamble this time. Let’s jump right in. — DAN: So secondary … often use primary metabolites as building blocks to produce novel molecules. And so we’ve got glycosides being made into …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … of view, I mean, I don’t need to say to you, but they’re unprecedented in the terms biosynthetic gene clusters and … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … synthases so that we can start to use the DNA sequence to predict or just understand better the language of microbial … to identify what’s being made. In some cases it might be novel, in some cases it might be– might be a known structure …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … mining, which is using DNA sequence to identify and interpret biosynthetic, secondary metabolism pathways. And today, … of a plant, so the bacteria living on and inside the roots are protecting the plants against pathogens. So …
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … an exploration into the secondary metabolism of some more novel marine bacteria. You know, I first met Bill as a … under Brad Moore on the Salinispora project,  so this is pretty comfortable territory for us, and I’m grateful to be …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables …
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Cultivating Symbiotic Antarctic Microbes
… organisms as had been originally thought. The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in … their collaborators in 2013. While most DPANN lineages are predicted symbionts, the Nanohaloarchaeota were predicted to …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … so these concentrations of arsenic and lead and mercury are pretty high as well. And these organisms have no problem … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data portal …
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Homepage
… homepage video includes external footage from: University of Delaware; Laura.Selbmann©PNRA. All the sampling activities in Antarctica have been performed in the frame of italian … Research; all specimens collected and fungi isolated are preserved in the Culture Collection of Fungi from Extreme …
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