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Natural Prodcast Episode 11: Marnix Medema
… Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … pathways. And today, we get to present our conversation with Marnix Medema , from Wageningen University in the … clusters. And then they sequenced a really nice and good assembly. They were able to assemble a really high quality …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … of secondary metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our … many different sources. A duplication is highly related to diploids and sexual differentiation. So we feel that the …
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Natural Prodcast Episode 23: Aaron Puri
… I really do want you all to hear this great conversation with Aaron Puri. He is an Assistant Professor from the … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … and they were able to synthesize the genes for every single one of those and put them in individual plasmids and …
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New Lineages of Life Group
… We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning … discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … environmental samples. This work combines third generation sequencing and machine learning to enable fast, accurate …
Learn more
Community Science Program
… Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for … Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 18: A CSP Primer
… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … There’s a lot of manual work in terms of the annotate, the assembly, the curation, QC, annotation of these data sets. … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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CSP Functional Genomics
… ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable without the capabilities and expertise available at the JGI. … Proposals to this call may be submitted to the JGI at any time using a simple web-based form and are reviewed …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a … the Letter of Intent; rather proposals are submitted in a single step. … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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Natural Prodcast Episode 19: Bill Fenical
… and we talk about an ongoing project I’ve been working with him on as an exploration into the secondary metabolism … we want a chemist to study the ocean. And I didn’t find a single job advertisement. But one day, I decided to really … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … out every two weeks. This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in … DAN: Yeah, I don’t think your lab is gonna tackle that single handedly, right? So, yeah, getting the community …
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