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… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome … necessary to extract meaningful biological insights from sequence data, employing IMG data and tools for comparative …

… Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … even in primary metabolism or in certain snips of viruses or something. I don’t know. Then I think making sure …

… The JGI supports the entire data life cycle — from experimental design to reuse. Armed … We have two key priorities:  The JGI is involved in efforts to integrate data in support of new research questions … Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any inconvenience. …

… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic …

… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … ) 108/161 Viral Enrichment Draft quality assembly from virus pools/plaques obtained from a single host, many …

… in natural products, and especially if you’re in the drug discovery angle, is to look in industry. But you’re a … have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting … sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of Sample QC …

… When submitting sequences to the JGI DNA Synthesis program, please include … Sequence files for all constructs should be emailed to  Miranda … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

… Computing Center ( NERSC ) is to accelerate scientific discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( … The researcher then submits a proposal for consideration in the next review cycle. All proposals …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … always been the main driver for secondary metabolism drug discovery. Because we always need new antibiotics. We need … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …