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Natural Prodcast Episode 17: Cassandra Quave
… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week … resources, but they don’t necessarily have the support network, the equipment, the facilities to really apply the … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Secondary Metabolites Program
… algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … platforms, tools and data for deciphering regulatory networks, and refining experimental approaches to explore … of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The …
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Natural Prodcast Episode 6: Marc Chevrette
… project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s … Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his … sending signals. But really unpacking that complicated network of chemistry and communication is what I’m really …
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How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … and storage (from PacBio) Best practices for High Molecular Weight DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality …
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Viral Genomics Group
… of uncultivated viral diversity, characterization of molecular mechanisms involved in virus:host interaction and … overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … do with GNPS, the Global Natural Product Social Molecular Network, where you can teach people in real time how to use …
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Natural Prodcast Episode 3: The Primer, Part 3
… and listen to the first two parts ( part 1 is here and part 2 is here ) so you understand what’s happened so far in the … it’s a little hard to find in print, but we live in the information age and the ebook version is available at most … product hits. Sort of in parallel with that, the field of molecular biology got more sophisticated around the 80s and …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … are unknown. And so we've done the sequence similallity network analysis where we look for other receptors with … it back to us, and we actually will do a little bit further evaluation actually. Grow up extracts and test it. Because …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … was like a nice summer day in Seattle I think this was like 2013 or 2014. And antiSMASH — I know you’ve interviewed … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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