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… researcher then submits a proposal for consideration in the next review cycle. All proposals undergo technical review by … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …

The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by …

… and environmental sustainability. Fungi, with million species, are essential for ecosystem functioning — … our understanding of algal biology using genomics and multi-omics by working with research labs and culture … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … encoded by them. Well, they had come out over actually multiple decades of time. But still to be able to use those … family would be a set of gene clusters across different species, which all encode the production of either the same …

They produce a large array of different molecular species related– chemically related– but nevertheless we did … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … able to produce chemistry that deals with reactive oxygen species and so potentially could go down that route.  DAN: … garden ant as well as the American honeybee. And so I have multiple opinions which I’m never short of but. In terms of …

Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and …

… then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … us on that. You know, as an added benefit, the S. tropica species also makes an anticancer agent that today is in … of environmental health that we’re now working on. And this multi investigator new program that NOAA has funded to …

PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … embargo starting at construct or strain delivery.  Detailed sequence information for constructs are made publicly … use-restricted data. JGI proposals typically include multiple projects of different types which can span several …

… and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes …

… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… we’re thinking they’re obligate marine. There’s so far no species or no strains known that really grow in freshwater. … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …