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… researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … ) to enable the research community to perform large-scale multi-omics analyses on new and existing microbiome data.   …

JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … for Biotechnology . We are located in the Integrative Genomics Building in the heart of the Berkeley Lab campus, atop … users—those who apply for JGI resources and are engaged in active projects—each year. In addition, several thousand …

… microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …

Metabolomics strengthens -omics technologies at the JGI by … functional genome annotation, improves understanding of the role small molecules play in diverse biological … they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …

… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also a really … box, we’re talking many, many orders of magnitude more players in the game, they’re all talking to each other, most …

PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … for their planned work.   … For sequencing or metabolomics projects: data are subject to a  one-year embargo .  … use-restricted data. JGI proposals typically include multiple projects of different types which can span several …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy … sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates …

… influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … model system by identifying phages and characterizing this multipartite phenomenon in additional plant and bacterial … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … as a research lab, we were also quite focused on finding bioactive molecules and doing medicinal chemistry, doing … projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in plants, fungi, …

… users and their science including technical capabilities offered, proposal review procedures, and the annual user … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is … and terms of service Any investigator who has been an active user of the JGI at any time in the past two fiscal …

… usually very beneficial to the field. It’s very, very, very multidisciplinary, is the usual term for that. So yeah. … like E. coli , and then being able to look using the metabolomics capabilities also at JGI — it’s really cool that it’s … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …