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Microbiome Data Science Team
… discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … dark matter as well as the development of novel methods to enable large-scale comparative analysis, mining and … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products systems. … came about because he challenged me on my use of the term “secondary metabolism.” And so we talk a lot here about …
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Natural Prodcast Episode 23: Aaron Puri
… now I’m working on this the afternoon of the day I’m due to release it, which is not ideal for me keeping myself on … to predict or just understand better the language of microbial cell-cell communication. And he told us about his … it’s a little intimidating. DAN: Unfortunately Alison is no longer with us… She’s alive! She just doesn’t work for JGI …
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Natural Prodcast Episode 17: Cassandra Quave
… and Sciences. She’s an ethnobotanist and the herbarium curator there, with a broad range of experimental work on plants … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … that we found, indeed, that both formulations had some antimicrobial properties. But the one that was used in …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s … to sequence is, you have to have a sequencer that can read longer than the repeat, otherwise, you have no idea how to … Canada. I just got back from a conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural … sets and seeking to interpret function from BGCs. It’s a long, wide ranging conversation and I’m so happy we got the … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …
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Microbial responses to long-term warming differ across soil microenvironments
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Institutional User Agreements
… Appendix identifies the type of work or specific proposal to be covered under the Agreement. The signing official must … authority to commit your institution or organization to the terms and conditions in the User Agreement.  These include, … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … Schmidt, from the University of Utah. I’ve known Eric for a long time – we worked together on Aflatoxin biosynthesis … everywhere. They’re at the base of the animal kingdom, in terms of evolution. Because they’re sitting there, they tend …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural … work encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses …
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Natural Prodcast Episode 19: Bill Fenical
… Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of the real … with Alison as my co-host. We recorded this an awfully long time ago, and she’s been in her new job for a long time … powerful people. These were people that really controlled microbial drug discovery. And a guy like me, with no …
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