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Products
… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … to the  MassIVE repository . Not all products are available for all proposal calls.   Please review the call language … carefully to ensure that your request is appropriate for that call. Learn more about the  average base outputs …
Learn more
How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … research data and analysis products (referred to as “data” for the remainder of this policy) produced through all user …
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Viral Genomics Group
… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses … including laboratory incubations and microfluidics methods to better investigate the host range of phages in …
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Analyze Data
… We have two key priorities:  The JGI is involved in efforts to integrate data in support of new research questions … Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any inconvenience. … Chief Informatics Officer …
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Natural Prodcast Episode 12: Nadine Ziemert
… welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … the batch effect. Because they use different extraction methods and stuff like that. So we have a lot of data out …
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Industry Engagement Program
… and curated data to support AI applications. In an effort to lead AI-driven genomic innovation to advance … and state-of-the-art sample processing.  Our Biodesign platform enables users to test hypotheses via designed and … accessible, AI-ready large-scale data repositories for genome information with analysis tools for mining and …
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Microbiome Data Science Team
… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … The research efforts of the group have concentrated in demonstrating the … functional dark matter as well as the development of novel methods to enable large-scale comparative analysis, mining …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support … This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, nutrient cycling and … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods …
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Metabolomics Program
… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, environmental sustainability, …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … the enediyne we have isolated to date by the traditional methods. But more importantly, we hope through enediyne that …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … JGI is we identified using some different computational methods a bunch of different syntheses that make quorum … sometimes you can be out of luck right or it could be a whole grad student thesis to synthesize a 13C-labeled …
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