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… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …

The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to … This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, nutrient cycling and … for assembly by Gibson, Yeast recombination and Golden Gate methods … gRNA-SeqRET … BOOST … Synthesis Platform Lead … …

… welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … the batch effect. Because they use different extraction methods and stuff like that. So we have a lot of data out …

… biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … within plants, microbes, and ecosystems. Identifying and analyzing primary and secondary metabolites helps uncover … The program employs advanced mass spectrometry-based methods to analyze metabolites from a wide range of …

… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … functional dark matter as well as the development of novel methods to enable large-scale comparative analysis, mining … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … the enediyne we have isolated to date by the traditional methods. But more importantly, we hope through enediyne that … natural product versions of enediyne molecules, there’s a whole bunch of other atoms that can either stabilize the …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … JGI is we identified using some different computational methods a bunch of different syntheses that make quorum … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … genomes from three domains of life. It provides tools for analyzing the functional capability of microbial communities …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … selfishly. Of course, this was also very important for the whole community, so. This resonated with a lot of people, …

… significantly lowering costs. Staff process samples, perform quality checks, and prep libraries for sequencing. They apply Lean Six Sigma practices to … and development approaches, testing various platforms to see what works best for applications. The team …

… overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …