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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … phenotypic differences in plants and will accelerate gene discovery. BrachyPan on Phytozome (see Brachypodium … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … work. And that it involves some of these crazy genes, some of these enormous genes that encode these very … relates to a whole different field like computational drug discovery field, which has been quite distinct from the …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … species.  Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … and he’s doing some amazing research in and around drug discovery, which includes screening methods, genome mining … mining-based approaches are that other than resistance genes, you have no way of knowing of whether or not a …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … strains, or enzymes to convert plant biomass components into fuels, chemicals, and bioproducts, … and accelerating biosystem-design to spur scientific discovery. Projects focused on organisms for comparative …
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … We also talk about his move to microbiology, about drug discovery and why it’s so hard to succeed, and we talk about … then of course using modern phylogenetic tools measuring genes, the 16S gene, and comparing it with everything that’s …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a … a paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists … to find the enzymes that make the rumen such an efficient biomass-degrading environment and transfer that ability into …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … in natural products, and especially if you’re in the drug discovery angle, is to look in industry. But you’re a … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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New Lineages of Life Group
Our research is focused on the discovery and characterization of novel bacterial, archaeal … viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … cutting-edge research in synthetic biology by synthesizing genes, pathways, and whole chromosomes for bioenergy and … to explore sequence-function relationships, advancing the discovery of new biosensors for biofuels and bioproducts. …
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Natural Prodcast Episode 16: Marcy Balunas
I really became more and more interested in cancer drug discovery and pharmacology but I didn’t know how to get … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … computational skills among biologists JGI CSP Proposal: Metagenomic mining of natural product diversity and …
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Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
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