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… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses … filter, cluster, annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. … Selected Publications …

… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … A complete publication list available at Google Scholar. Dutkiewicz, Z. … Conservative taxonomy and quality assessment of giant virus genomes with GVClass. ”  npj Viruses, Volume 2 Article 60. …

… provides customized analysis, the JGI also participates in publication of results. …

… catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to … analysis and annotation of all publicly available genomes from three domains of life. It provides tools for …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other … the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . 39(5):578-585. Nayfach S, et …

… Plant Flagship Genomes are selected through discussion with the JGI Plant … Advisory Committee and DOE, designating a set of JGI plant genomes that are the most important to DOE mission and plant … datasets to further gene function research. The  Open Green Genomes (OGG) project seeks to develop comparative high …

… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … metagenome sequence, in the context of reference isolate genomes included from the IMG/M system. …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as reference genomes are critical to serve as phylogenetic anchors for …

… and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … a number of years earlier as one of the first Streptomyces genomes that had just not  been released yet. And there was … rumors of people sequencing like these enormous numbers of genomes, like 20 genomes, which was just incredible at that …

… analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and genome-centric … Integrated Microbial Genomes and Microbiomes …

… access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …