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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … We need new cancer agents. We need treatments for humans. And it just so happens that bacteria make a lot of … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our … , and the Arizona Genomics Institute. We are located in the Integrative Genomics Building in the heart of the Berkeley …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … like a lot of people hedge their way into natural products by starting out in synthesis and then discovering more-- … coelicolor versus Streptomyces lividans. They both have the genes. The genes are pretty much 100% identical. We don't …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … in terms of the annotate, the assembly, the curation, QC, annotation of these data sets. For our eukaryotes, in … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … Or genes that you can put a name into it, some sort of annotation, but they are not really well characterized. But, … talk about secondary metabolism because they are useful for humankind. We forget that the real champions of the story …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … where you have to go miles underneath the surface where no human has ever tread And that there’s very, very, very low … mining-based approaches are that other than resistance genes, you have no way of knowing of whether or not a …
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Industry Engagement Program
… that had remained largely unknown and underutilized by industry. When Director Nigel Mouncey joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … including User Facilities like the JGI, through its Genesis Mission. Launched in 2025, the initiative aims to …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, … drive innovations that could advance our understanding of Earth’s ecosystems. …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … challenges in the sourcing, recovery, and utilization of critical minerals and materials. The proposal submission … Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … and energy genomics. The two-story mural at the Integrative Genomics Building was painted by Berkeley-based artist Nigel Sussman and dedicated at our …
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