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… to predict or just understand better the language of microbial cell-cell communication. And he told us about his … had this new genome from JGI and this was before they were integrated. So I thought, why not feed it in there. And I … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …

… analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated context.  … The MycoCosm web portal provides data … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …

… making it difficult to propose projects that truly integrated the capabilities of more than one facility. The … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

… : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) and outside repositories (e.g. NCBI SRA or GenBank; …

… and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … when it’s, well, when the code is good enough, it can be integrated into the code base. And at the moment, we have … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …

IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … Fungi, with million species, are essential for ecosystem functioning — particularly in their roles associated … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and …

I did my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for … really to learn about JGI, learn about the national lab system, doing some research then. Of course, I never worked … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

Investigator Providing a general orientation to JGI systems to Investigators Preparation of formal Statement of … execution by: Metadata verification and coordination with IMG , GOLD and others for data annotation and submission … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …

… development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …