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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … across JGI Plant Flagship speciesspecies, using deep-coverage RNA-seq analyzed in a consistant computational … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.” Nat Biotechnol 35(7): 676-683 … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Sequencing Technologies
The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … program aims to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their … By expanding the repertoire of secondary metabolites and improving the tools for their characterization, the program …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … work that we’re doing, single cell work we’re doing. And using these together along with all of our computational … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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DOE Metrics
… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … Metrics Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … thing I’m really fascinated by looking at the field of cyanobacterial chemical ecology and all of that. So again, … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … you here. Tell me what you think the terms we should be using for what we do are, and why there and why it’s … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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CSP Functional Genomics
Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … to this call may be submitted to the JGI at any time using a simple web-based form and are reviewed annually. For …
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Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
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