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… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … metagenome workflow . mSystems 6(3). 10.1128/MSYSTEMS.00804-20 Nayfach S et al.  A Genomic Catalog of Earth’s … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) and outside repositories (e.g. NCBI SRA or GenBank; …

… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … and their associated metadata, around the world. … The IMG/M system serves as a community resource for comparative … available genomes from three domains of life, in a uniquely integrated context. IMG/M provides tools for analyzing the …

… the time this comes out, SMC will be in its first release version. And so yeah, that should be around the end of the … to help our users. So for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

… global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes … Science   355(6322):294-298 Paez-Espino D. et al. (2017) IMG/VR: a database of cultured and uncultured DNA Viruses … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got me into that … nice summer day in Seattle I think this was like 2013 or 2014. And antiSMASH — I know you’ve interviewed Marnix [Medema] … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

The User Support Analysis group provides computational analysis for new … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for standard sequencing …

… … Information on Software Looking for information on our software, including BBTools ? Click to find that on our …

The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … in synthetic biology engineering workflows. … The IMG/M system serves as a community resource for comparative … available genomes from three domains of life, in a uniquely integrated context.  … The MycoCosm web portal provides data …

… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

To expand access to integrated data, improve tools and infrastructure as well as … cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …