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Plant Program
… energy and agricultural productivity. Research spans diverse areas — from understanding how terrestrial plants … on fertilizers. The study of secondary metabolites enhances our understanding of natural compounds that support … At a May 2025 workshop, a panel of experts recommended …
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Natural Prodcast Episode 16: Marcy Balunas
… have organs for symbiotic bacteria so what’s – I guess that maybe you could say the gut is, kind of. But not the same … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … and that’s exactly what that does. But when you get more diverse, which, almost certainly, there’s a lot more stuff …
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Fungal & Algal Program
… labs and culture collections to produce hundreds of diverse algal genomes, which will be made accessible through … and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to improve … in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a collection of fungal genes …
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Environmental Genomics Group
… genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … Roux, S., Krupovic, M., Daly, R.A. et al. Cryptic inoviruses revealed as pervasive in bacteria and archaea across …
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Metagenome Program
… archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … microbial lineages. Charting viral ‘dark matter’:   Viruses are abundant in the biosphere and influence …
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Natural Prodcast Episode 23: Aaron Puri
… to turn it over it’ll become covalently bound to it and maybe there will be some a affinity tag or a fluorescent … be– when you’re doing this genome gazing and all these– maybe the charitable way to put it would be like you’re … what signal is being made. And so we picked a bunch of very diverse ones to try to learn as much about it as possible …
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Single Cell Research Group
… creep’, function prediction as purely based on annotation may not be sufficient. A more recent effort in the Woyke lab … Jensen G. J., Kyrpides N. C., Koonin E. V., Woyke T . Giant viruses with an expanded complement of translation system … Selected Publications …
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CSP Functional Genomics
… leveraging JGI’s Biodesign and ‘omics capabilities to enhance understanding of gene and genome function, … and expertise available at the JGI. Proposals to this call may be submitted to the JGI at any time using a simple …
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Plant Microbial Interactions Group
… symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, … Selected Publications …
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Microbiome Data Science Team
… U. et al. (2022) Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Biotechnology  35(7):676-683 Schulz F, et al. (2017) Giant viruses with an expanded complement of translation system …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… a fairly small number. We’re a very niche podcast. And so maybe if we can combine two things where we interview you … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … that there’s a lot of fragmented — identifiable BGCs but highly fragmented, in most of the metagenome sequences that …
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Institutional User Agreements
… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … must be notified immediately. Either of these changes may require new signed paperwork, and getting new documents … on behalf of LBNL, and will notify all parties when work may begin. DNA SYNTHESIS PROPOSALS: Additional Requirements …
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