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Metabolomics Program
… plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for … samples — including microbes, fungi, plants and soils. Through a combination of experimental workflows and … and bioenergy development. … EcoFABs:  For studying microbe-host (or plant-microbiome) interactions under controlled …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single drop of water could …
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Data Policy
… to as “data” for the remainder of this policy) produced through all user projects accepted FY22 and later through … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … projects as described above, but JGI portals will still host use-restricted data until the period of use-restriction …
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Giant virus diversity and host interactions through global metagenomics
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Environmental Genomics Group
… genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through … Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 8: Eric Schmidt
… with animal metabolism itself, and it’s really amazing what diversity there is in animals. I think, even despite the … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the … PhD mentor, the late, great D. John Faulkner. He was a giant in the field, and left behind a legacy of fantastic …
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Natural Prodcast Episode 12: Nadine Ziemert
Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … see. So it doesn’t seem to be a correlation between biodiversity in taxa and biodiversity in secondary metabolites. … even in primary metabolism or in certain snips of viruses or something. I don’t know. Then I think making sure …
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Natural Prodcast Episode 23: Aaron Puri
… the future. So, then we were using these probes to look at host pathogen interactions mostly with like enteric … the answer would be that there’s actually a great deal of diversity within these methanotrophs for example, that are … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… is that you could, therefore, expect a lot of chemical diversity. So many compounds will fulfill the same function. … the producing organism and strong interactions and the host or even in tripartite systems. So, in those cases, it’s … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Natural Prodcast Episode 17: Cassandra Quave
I’m talking about is called the Convention on Biological Diversity . And there’s something called the Nagoya Protocol … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … primates should they pass the next steps in terms of live virus testing. So having that ability and willingness to …
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Natural Prodcast Episode 16: Marcy Balunas
MARCY: Sure. So my lab has really converged on the study of host-microbe chemistry. And the interactions– As much as we … postdoc Panama as part of the international cooperative biodiversity group (ICBG) based in Panama and was dual there … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …
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Secondary Metabolites Program
… program aims to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their … algae and plants. These compounds are key to organisms' interactions with their environments and with each other, … under standard laboratory conditions by their native hosts. We are developing cell-free based systems to express …
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