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Microbiome Data Science Team
… of host-virus interactions, the exploration of the functional dark matter as well as the development of novel … Commun. 7:10476 Varghese NJ,  et al. (2015) Microbial species delineation using whole genome sequences. Nucleic … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… of thing. BETSY PARKINSON: Yeah. So, palladium catalyzed cross-coupling-- DAN: Got it. BETSY PARKINSON: --all that … these hormones actually oftentimes will bind to receptors within biosynthetic gene clusters. Specifically, these are … shown today is it's more a quorum sensing within a single species. DAN: Within a species. Genus? BETSY PARKINSON: So …
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Natural Prodcast Episode 8: Eric Schmidt
… with animal metabolism itself, and it’s really amazing what diversity there is in animals. I think, even despite the … one of the most common animals in the ocean. They’re really species-diverse. I lost track actually of the number. But, … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Viral Genomics Group
… and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved … inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes. Nature Microbiology. 4 , 1895–1906 … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Doubling Down on Known Protein Families
Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach to … National Laboratory (Berkeley Lab), and collaborators across multiple other research centers around the world. … distinguish which gene belongs to each individual microbial species within a community. Therefore, the process hinges on …
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Microbial Program
… using advanced sequencing technologies to explore microbial diversity — with an emphasis on bacteria and archaea, and … and single cells. This effort uncovers novel genes, protein families, and pathways, enhancing our understanding … three domains of life. It provides tools for analyzing the functional capability of microbial communities based on …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… or specialized metabolism, what we are often coming across is very complicated pathways with many, many enzymes, … They produce a large array of different molecular species related– chemically related– but nevertheless we did … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Secondary Metabolites Program
… focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, … program aims to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their potential …
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Environmental Genomics Group
… lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 23: Aaron Puri
… the answer would be that there’s actually a great deal of diversity within these methanotrophs for example, that are … me in the woods then. [LAUGHTER] JACKIE: So we’re kind of across — covered quite a few different topics. And so right … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Natural Prodcast Episode 7: Ben Shen
… all really excited about that, and I think that comes across in the interview. If you listened to the Primer … Fleming – the discovery of penicillin from the fungal species – probably told us that fungi could be very … you to, say, go to your grandma’s backyard. To collect the diversity that exists in the 1940s? The answer is no! If …
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DNA Synthesis Program
… solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing … role in advancing functional genomics, focusing on developing genetic systems that can address global energy and … genomics of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative …
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