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… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological … into practical applications, including sustainable biofuels, biomaterials, natural products, and environmental …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … drive innovations that could advance our understanding of Earth’s ecosystems. … a snapshot of microbial diversity and their metabolic functional potential. This research enables us to better …

… joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … and assembled physical DNA constructs that can then be functionally characterized.  Our metabolomics platform … and environmental samples by using advanced computer analysis coupled with liquid chromatography mass …

… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … the JGI’s focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end … large-scale liquid handling automation, and sequence analysis. …

… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet … and protein folding models, to improve the accuracy of functional predictions and speed up genome analysis. …

… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to …

… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, which is not ideal for me … and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing …

… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … the need to have a limited and time-sensitive protection of certain types of data to support their use by those … data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for the remainder …

… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … call is for PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate … accepted proposals, sequencing, synthesis, metabolomics and analysis will be performed by the JGI at no cost to the user. …

… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) …

…  Through this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse biological … based methods in combination with advanced computational analysis.   Overview of metabolomics products At JGI, …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … take to improve on the data side of things and sequencing analysis side of things to really start to be able to …