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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of … scientific research from a broad range of disciplines. Three calls fall under the umbrella of our CSP: The … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
Learn more
Natural Prodcast Episode 17: Cassandra Quave
QUAVE: So the other thing that we do on the ground with the communities themselves is really think about what are their … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … that we found, indeed, that both formulations had some antimicrobial properties. But the one that was used in …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as … genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during … bioenergy crops … Characterization of simplified soil communities with high and low carbon use efficiency across …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial … just been looking at like 16S taxonomic profiles of these communities looking at who is in there, but never like what …
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Natural Prodcast Episode 9: Roger Linington
… of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, … And that facility included both European scientists and North American scientists. And I saw a very different … to try and create an open source database of all known microbial natural products. So if you think about natural …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the …
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Viral Genomics Group
… parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Natural Prodcast Episode 18: A CSP Primer
UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
Learn more
Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … required by the DOE for all work performed in its User Facilities, is a legally binding contract.   All User … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Micro-Scale Applications Group
Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for … aims to increase plant production of starches and oils, which are more easily converted to fuels. This Center … breakthroughs in basic science, and is exploring microbial-based synthesis of fuels beyond ethanol. … The JGI …
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