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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … The Metagenome Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … breakthrough discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides …
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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … of certain types of data to support their use by those generating data. The JGI Data Policy applies to research data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a … for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  Submit research proposals  here that integrate genomics with nanoscale science, accelerating …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to …
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Natural Prodcast Episode 23: Aaron Puri
… And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … And one would envision that microorganisms have evolved multiple variations of these compounds. And so if you’re … sometimes you can be out of luck right or it could be a whole grad student thesis to synthesize a 13C-labeled …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This … high-throughput processing of samples in 96-well plates on automated liquid handler platforms, substantially increasing …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to work on sequencing, … natural product versions of enediyne molecules, there’s a whole bunch of other atoms that can either stabilize the …
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Natural Prodcast Episode 14: Nigel Mouncey
… off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of strain engineering efforts. We did a lot of … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … challenges, such as improving soil health, carbon sequestration and bioeconomy applications. The program provides …
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Natural Prodcast Episode 18: A CSP Primer
… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … 100 kb versus 500 kb. In the lab, they’re going to do the whole set at one time. So it’s better to have really more, …
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Natural Prodcast Episode 16: Marcy Balunas
… And so these tubules are like tiny monocultures but the whole of the organ which is about the size of your pinky … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we …
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