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… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … over the last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, … Marnix and his collaborators have a fantastic set of software tools for exploring secondary metabolite …

… The Facilities Integrating Collaborations for User Science (FICUS) … to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. …

… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient … to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their potential …

… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … of certain types of data to support their use by those generating data. The JGI Data Policy applies to research … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions …

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such … gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA …

… Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … You can visit the Products & Offerings section of our website for more details, including a … The majority of JGI projects come from the user community. Find out about …

… Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … profiles in bacteria as well. Yeah. DAN UDWARY: Yeah. Yeah, common root.  ALISON TAKEMURA: And so is that how your …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … were basically interchangeable terms in terms of common usage. And I was recently challenged on that on … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … The Plant Program advances our understanding of plants’ biological and ecological roles to foster …