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… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … functions that shape ecosystems. By decoding the microbial DNA in natural environments, the Program provides a snapshot … We develop computational tools for analyzing viral fragments via IMG/VR and methods to capture  environmental …

… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … and make sure that what the algorithm had done was actually accurate. And so we told people that if they would curate … are a little bit more difficult to handle. The number of variables is quite high. Mass spectrometry, in particular, …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … the  product offerings and are unrestricted for use. … For DNA synthesis projects: data are subject to a  two-year …

Below is a brief description of the process needed to prepare and ship samples for … Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …

Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … our HERE (TK) .   Please inform your project manager of an accurate date of sample preparation and anticipated … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …

Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … depending on how strict they get in terms of contig length and all those kinds of things because metagenomes can …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … from diverse bacterial and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function … metatranscriptomes, with over 15 million viral genomes and fragments. … GOLD is a web resource for comprehensive access …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … biosynthesis. And so yeah, you basically have your chain length and then some sort of substituent at the third carbon … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … I talked about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, … around 800 biosynthetic gene clusters, many of them full length. And then we started prioritizing, OK, which gene …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … And then we’re building phylogenies a lot, making phylogenetic trees, and then trying to see if the trees make …

Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities … could have arisen from. DAN UDWARY: OK, so sort of a phylogenetic reconstruction kind of a thing. ALISON NARAYAN: …