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FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual … PacBio sequencing platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE … = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† …

… … DAN: Hello, everyone, and Welcome back for Episode 14 of … really functional genomics. And there’s a lot of sequencing based approaches, of course, now that we can use to figure … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

The Community Science Program (CSP) provides the scientific community at large with … this program, the DOE aims to advance genome science-based scientific research from a broad range of disciplines. … more customized analysis, the JGI also participates in publication of results. See more details on our Review …

With collaborative user projects, the JGI’s Plant Program delves into … resilience. The program’s discoveries support a plant based bioeconomy where plants are a major source of chemical … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… … DAN: You’re listening to the US Department of Energy Joint … then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … to really challenge me, and as being sort of a laboratory based scientist, to get out onto the ocean and do ocean …

… … DAN UDWARY: You’re listening to the Department of Energy … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …

… … Dan Udwary: You’re listening to the Department of Energy … all connected. And you can color these nodes. For example, based on taxonomy, or based on class of biosynthetic … pathway even if the genes are scrambled or altered in the chromosome. And so it becomes very difficult then to compare …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of … roles in the environment, can unlock new avenues for bio-based products and bioenergy crop enhancement. The program … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, …

Below is a brief description of the process needed to prepare and … requirements for samples submitted to the DOE JGI. Plate-based Preparation Guidelines DNA Preparation Guidelines RNA … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … see things that maybe aren’t real, and so it’s thought that based on historical records and weather recordings of the …

… … DAN: Hey, everybody. Welcome back for another episode of … guy named Matt Bogyo in grad school synthesizing activity based probes which are basically molecules that will … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …