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Products
Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … amino acids, nucleosides, etc) metabolites using normal phase chromatography coupled to tandem mass spectrometry … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …
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CSP New Investigator Call
… for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … CSP or FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for … the process. If you have any questions, please contact your Project Manager or jgi-project[email protected] . … 1) … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … also relatively scalable, so you can put in at least a few thousand gene clusters in a view and it still remains … can convince them of course. So that needs, also, this seed phase where you really need to get the input already from a …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … very closely with them in manufacturing to get things into piloting and to finally get things into commercial … And not just do this in the tens scale, but can we get to thousands at a time and do this so that we can not only …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …
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JGI Portals
… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to …
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Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … and Gene Integration … Metabolomics Program in Detail … Projects and Initiatives … Metabolomics Program Head … …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … to now. But at the time, there was maybe, yeah, several thousand fully sequenced biosynthetic gene clusters from … coming up with new chemical compounds as well, getting the phase I trials, phase II trials. And at the time, nobody was …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et …
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CSP Large Scale Call
Program Large Scale Call is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … to unravel functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, …
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