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Microbiome Data Science Team
… global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of … Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes …
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Natural Prodcast Episode 7: Ben Shen
… or…? BEN: Yeah. So, if I want to put it into perspective, right, so the enediyne structure – the enediyne … So I wanted to ask you also about – because you were in the news recently – TSRI has acquired the Pfizer strain … product. So we are able to enrich the pipeline, for big pharmas like Pfizer will be able to really now take them into …
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Natural Prodcast Episode 14: Nigel Mouncey
… never forced it on me, but we always had these scientific news magazines lying around at home. And I would just pick … a baseline process. And then really dig deeper into both aspects of the strain, as well as the fermentation process … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Natural Prodcast Episode 12: Nadine Ziemert
… she’s a genome miner and has been involved with the AntiSMASH and MIBiG projects. And I found her review in natural … Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Natural Prodcast Episode 1: The Primer, Part 1
… probably heard of the Salem Witch Trials back in the what? 15th, 16th century.  ALISON: Yeah, I lived in Massachusetts for a while. DAN: There you go. So you’ve … of see it. DAN: So what we’ve got here is, I just grabbed a photo of a “biochemical pathways” chart. So if you spend any …
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Natural Prodcast Episode 5: Brad Moore
… and I did that. And looking at all those art history photos of the, you know, various old buildings in in Rome … they do something, and then they come home. The kid’s perspective. And you don’t see what happens behind that period … natural products in the desert? Brad: Yeah… there was a master plan. And Tucson was a magical place for me as a …
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Industry Engagement Program
… industry. When Director Nigel Mouncey joined the JGI in 2017, he brought with him 20 years of industry experience — … computer analysis coupled with liquid chromatography mass spectrometry. We offer accessible, AI-ready large-scale data …
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Environmental Genomics Group
… incorporation of isotopes from labeled nutrients into biomass. When paired with metagenomics, qSIP can decipher … into DNA by active microbial populations (Hungate et al. 2015). With the development of high-throughput SIP (Nuccio et … strategies across environmental microbiomes. mSystems0:e01744-24. https://doi.org/10.1128/msystems.01744-24 Oliver, …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… and materials. The proposal submission deadline is March 31, 2026 .  … the Molecular Foundry, the project needs to be scoped for 12 months or less. We can help you scope that part of the proposal. Also, once awarded, users have 12 months before they need to activate their project. …
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Natural Prodcast Episode 23: Aaron Puri
… like a nice summer day in Seattle I think this was like 2013 or 2014. And antiSMASH — I know you’ve interviewed Marnix [Medema] — was out … and is again, maybe highlighting the people-centric aspects of the broader field and just going from one question … an unusual acyl-homoserine lactone signal . mBio. 2023 Aug 31;14(4):e0101023. doi: 10.1128/mbio.01010-23. Publication: …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our little section … or subdisciplines, started to grow and have different perspectives– from the chemists on one side, microbiologists, … knowns, and to move a little bit away from that to try to unmask chemical dark matter. And the idea behind this is that, …
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Single Cell Research Group
… Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … A. L., Eloe-Fadrosh E. A., Pavlopoulos G. A., Hadjithomas M., Varghese N. J., Paez-Espino D., Hungate project, … and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). …
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