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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … a great, fun bunch of little shows lined up, and I’m really looking forward to getting them out to you all. But for now, … put out some software called DeepBGC , which is a machine learning tool that tries to look at patterns of Pfams …
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Viral Genomics Group
… and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The … microbiome processes is still limited. One key challenge is to complement diversity surveys ( Who is there? ) with … and how? ). The JGI Viral Genomics group attempts to address this question in natural soil ecosystems by …
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Microbiome Data Science Team
… of “big data,” and artificial Intelligent/machine learning approaches in data analysis and interpretation is … discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … dark matter as well as the development of novel methods to enable large-scale comparative analysis, mining and …
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Partnerships: Myco-Ed
… fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques and data analyses compile original data for … tissue, isolate genes and more. The metadata then goes into iNaturalist. Myco-Ed has:  ~50 lineages selected for …
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Natural Prodcast Episode 17: Cassandra Quave
… and Sciences. She’s an ethnobotanist and the herbarium curator there, with a broad range of experimental work on plants … in antibiotics, anticancer, and now COVID. We also wanted to talk to her because she’s written a book about her life … work in natural products, you’re going to get a great look at the intersection of traditional medicines and …
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CalTeach
… in developing a deep understanding of STEM teaching & learning. Their coursework focuses on STEM pedagogy, … with concurrent field work in local classrooms and tutoring centers. Cal Teach offers a minor in Science and Math Education, as well as a unique opportunity to complete a California K-12 science or math teaching …
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JGIota: Looking Back at Sequencing for Soybeans
… With a full genome sequence, researchers have been able to look into soybean’s strengths – along with a fungus that threatens …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sale. All year, the JGI helps support finding solutions to clean energy and environmental challenges. And many … “We’re shifting now to our net-zero strategy. And so we’re looking at the overall greenhouse gas impacts from all of … sense, this is a very good club to join.” Interested in learning more about the Sustainable Garden Club at LBNL? …
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours of each floor, click and drag to look around the space, use the graphic rings to move about …
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User Programs
… Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and … CLOSED ONGOING ONGOING CLOSED Who Should Apply? Investigators with research projects that integrate the expertise and …
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Natural Prodcast Episode 23: Aaron Puri
… now I’m working on this the afternoon of the day I’m due to release it, which is not ideal for me keeping myself on … going in the future. So, then we were using these probes to look at host pathogen interactions mostly with like enteric … going– I think it’s going back to the basics and really learning about basic biochemistry and what we can glean from …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into … not treated with fungi, they used multiple approaches to look at gene expression in both plant cells and fungal … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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