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… of their bacterial host to colonize plant roots, as with Arabidopsis thaliana. Using a coupled experimental and … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … Ruoxi Zhao (UC Merced Intern) Alex Pennacchio (Occidental College Intern) Cristian Espinosa (UC Merced Intern) Maria …

… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and environmental … serves as a community resource for comparative analysis and annotation of all publicly available genomes from three …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples … to the DOE, and publication requirements. An official with authority is usually an individual in a central office, …

Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready … public. Things that you do to BGCs– you can add your own annotations and do things to the data — That all becomes …

Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at …

The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … Previously, researchers had to apply to each facility with separate review schedules and selection processes, … fundamental science experiments in ways they couldn’t with projects undertaken separately at individual user …

… world-class science. DOE JGI Project Managers collaborate with users to develop project requirements, define the scope … work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the … and coordination with IMG , GOLD and others for data annotation and submission Tracking, monitoring and …

… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … prior to shipment to the  JGI. The documents below (posted with permission) demonstrate the importance of proper … materials.  PI will receive a shipping approval email with shipping instructions.  Provide your shipping address …

… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … clones if low number of variants, or pool of variants with sample sequencing to predict the number of successful … short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … Genomes & Microbiomes system ( IMG/M ) supports the annotation, comparative analysis, and distribution of …

… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … carbon management, and environmental sustainability. Fungi, with million species, are essential for ecosystem … its major branches for users to characterize and propagate annotations across fungi. Myco-Ed Genomics Initiative   …

CalTeach is a program for undergraduate majors interested in developing a deep … & learning. Their coursework focuses on STEM pedagogy, educational theory and promoting diversity, equity, and inclusion, with concurrent field work in local classrooms and tutoring …