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… was established in part to help better-connect industry to JGI resources, as well as target academic, governmental and … community at large with access to high-throughput sequencing and other resources at the JGI for projects of … feedstock into valuable bioproducts, but many  Clostridium strains are difficult to engineer. Yasuo Yoshikuni and his …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce … the responsibility for leading the efforts to do so, and JGI expects acknowledgment (see Auspice Statement below) for …

The Sequencing Technologies Group applies cutting edge molecular … sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing technologies has allowed the JGI to increase sequencing output while significantly …

… the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our … PI and receive permission for their planned work.   … For sequencing or metabolomics projects: data are subject to a  … are subject to a  two-year embargo starting at construct or strain delivery.  Detailed sequence information for …

… to user project design, assembly, and quality control Strain Engineering Group : a research & development group … assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program.    Representative software …

… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC …

… and head of the Secondary Metabolites Science Program at JGI, and also my boss, Nigel Mouncey. I got him on to talk … already had a fermentation process with already engineered strains, but this was to further build on those to try and … NIGEL MOUNCEY: Oh, sure. I think our legacy obviously is in sequencing.  DAN: Of course.  NIGEL MOUNCEY: Sequencing the …

When submitting sequences to the JGI DNA Synthesis program, please include the following …

Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … And these organisms are pretty gnarly. We have an E. coli strain that we’ve been working on that we sequenced the … to grow. If you hear Nigel talk, he is very interested in sequencing a lot more natural product-heavy culture …

… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … really the same kind of thing. Before the age of genome sequencing, we had to basically break up the pieces of DNA … to get involved in whatever way that they might find an opportunity. DAN UDWARY: Yeah, it’s out there. I’m Dan …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in … expand representation of uncultivated microbial lineages. Charting viral ‘dark matter’:   Viruses are abundant in the … viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative …

… environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the … algae, examining both natural populations and engineered strains. This approach allows for the identification of key … an international research team in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a …