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Data Policy
… Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … research data and analysis products (referred to as “data” for the remainder of this policy) produced through all user … Program (CSP), Facilities Integrating Collaborations for User Science (FICUS) initiative, Director’s Science …
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Plant Microbial Interactions Group
… and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, … fitness and health. This is a dynamic and complex ecosystem that includes bacteria, fungi, viruses. Resident … phage function in this tripartite plant-bacterial-phage model system. We seek to expand beyond this model system by …
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Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae)
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A Grass Model to Help Improve Giant Miscanthus
… sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … biofuel grasses can be studied from simpler (and smaller) models, Miscanthus has a large and complex genome whose …
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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … User Facilities, is a legally binding contract.   All User researchers must have their home/employing institution sign …
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Who We Are
… Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… proposal call . This represents a unique opportunity for researchers to request the capabilities and expertise of … science, accelerating discoveries and developing transformative bio-based technologies that address challenges in … involving computational work with Dr. Blaby-Haas to model, predict, and understand nanoscale processes …
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Natural Prodcast Episode 4: Nancy Keller
… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … challenges were associated with getting good transformation systems going. That has a lot to do with, well, the fact … more interested just to see if we can use Aspergillus as a model for expressing hard to work with eukaryote [genes]. So …
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Metabolomics Program
… works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular level. Integrating genomics with … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …
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Natural Prodcast Episode 11: Marnix Medema
… genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … time]. And they had this project about this kind of weird system. And then they wanted so to look at secondary … I think this is really– I personally like this really as a model for a collaboration. You have your code as open source …
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New Lineages of Life Group
… insights into viral evolution and complexity, and encode for a treasure trove full of novel genes ready to be tapped for downstream applications. … between microbes and eukaryotes and their impact on ecosystem function: We investigate the intricate networks of …
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