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Michelle O'Malley
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Michelle O'Malley
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … they don’t have available in their labs, and we use our resources to help them solve those problems. It’s a fantastic … natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. When your …
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Natural Prodcast Episode 4: Nancy Keller
So it was great to hear her passion and enthusiasm for fungi. And we talk a lot about some of the technical … they only talk about the bacteria. My god! 30% of our gut microbes are fungi. It’s really frustrating to me. Maybe … you can think about.   DAN: What kind of genomic resources are available these days for the natural product …
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Natural Prodcast Episode 7: Ben Shen
… notes, and I’ll put up some structures and link to some resources you can use to get caught up, if you’re not already … and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a perfect storm in … penicillin from the fungal species – probably told us that fungi could be very productive sources for, say, biological …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … biological and environmental samples — including microbes, fungi, plants and soils. Through a combination of … … Projects and Initiatives … Metabolomics Program Head … Resources and Tools …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … what’s called “find and grind”. So you would find some new source that you hadn’t explored before. Like, you know, … been shared for a long time by many, many bacteria – and fungi and plants. And so that’s the power and the promise …
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Natural Prodcast Episode 9: Roger Linington
… box. So they would approach the problem sometimes from very unexpected orthogonal perspectives. And sometimes one of … effort that we’ve put together to try and create an open source database of all known microbial natural products. So … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … as a model for a collaboration. You have your code as open source and you can work with it together with whomever is … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… lives, they all process loads of tough plants. Thanks to gut microbes — namely, anaerobic fungi — these animals are able to pry apart plant polymers … her team saw that four strains of anaerobic fungi also, unexpectedly, secrete natural products . Those results …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to create renewable energy sources and bolster agricultural resilience. The program’s … relationships as well as insights into clade-specific novelties and expansions.  … Brachypodium distachyon is an …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … which, at least at the time, was called Inatreq . It’s a fungicide that is active against Sartoria which is a really … at JGI. We don’t have the infrastructure. It’s too many resources for us. So we need good people to partner with. And …
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